Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cebpa

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
Haematopoietic progenitor cells
cell type
GMP_CebpaWT
strain
C57BL/6 cebpa flox/flox
chip-antibody
Cebpa: Santa Cruz 14-AA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin from 100.000 preGMs or 500.000 GMPs was incubated with antibodies for histone marks (H3K4me3 and H3K27me3) or C/EBPa, respectively. The antibody-bound chromatin was captured with Protein-A sepharose beads, washed, de-cross-linked and precipitated. DNA was extracted using standard phenol-chloroform extraction Precipitated DNA were mixed with 2 ng E. Coli DNA and amplified using NEB Next ChIP-seq sample prep reagent set 1 (New England Biolabs) according to manufacturers protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
95341371
Reads aligned (%)
20.3
Duplicates removed (%)
31.7
Number of peaks
35756 (qval < 1E-05)

mm9

Number of total reads
95341371
Reads aligned (%)
20.2
Duplicates removed (%)
31.8
Number of peaks
35777 (qval < 1E-05)

Base call quality data from DBCLS SRA