SRX2781321
GSM2597667: DMSO H4K12ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K12ac

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
NCI-H1299-EGFP/NEO
treatment
DMSO
antibody
H4K12ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated using the DNeasy blood & tissue kit (Qiagen) NEBNext Ultra Prep Kit for Illumina (NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37265235
Reads aligned (%)
99.2
Duplicates removed (%)
3.3
Number of peaks
547 (qval < 1E-05)

hg19

Number of total reads
37265235
Reads aligned (%)
98.6
Duplicates removed (%)
4.9
Number of peaks
715 (qval < 1E-05)

Base call quality data from DBCLS SRA