Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
NCI-H1299-EGFP/NEO
treatment
DAC+SB
antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated using the DNeasy blood & tissue kit (Qiagen) NEBNext Ultra Prep Kit for Illumina (NEB)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
38373576
Reads aligned (%)
99.1
Duplicates removed (%)
3.5
Number of peaks
708 (qval < 1E-05)

hg19

Number of total reads
38373576
Reads aligned (%)
98.4
Duplicates removed (%)
5.4
Number of peaks
852 (qval < 1E-05)

Base call quality data from DBCLS SRA