Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FANCD2

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
FANCD2_IP_UV untreated
cell type
human cell lines (kidney, embryonic)
antibody
FANCD2
cell line
293T

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
47889616
Reads aligned (%)
9.2
Duplicates removed (%)
88.7
Number of peaks
536 (qval < 1E-05)

hg38

Number of total reads
47889616
Reads aligned (%)
10.1
Duplicates removed (%)
87.7
Number of peaks
619 (qval < 1E-05)

Base call quality data from DBCLS SRA