SRX2754634
GSM2587046: ChIP-Seq Input of PRDM15KO in Serum+lif mES cells; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESCs cultured in SL
cell type
ESCs
passages
30-40
strain
C57BL/6
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and histone-DNA complexes were isolated with antibody. Single read - Illumina

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36545827
Reads aligned (%)
90.5
Duplicates removed (%)
49.6
Number of peaks
1668 (qval < 1E-05)

mm9

Number of total reads
36545827
Reads aligned (%)
89.9
Duplicates removed (%)
49.4
Number of peaks
1547 (qval < 1E-05)

Base call quality data from DBCLS SRA