Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
TKO cells
antibodies
None
cell type
TKO cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was extracted with phenol-chloroform, ethanol-precipitated and treated with RNase. ChIP-Seq was carried out using antibodies against RNA PolymeraseII or H3K4me3, as previously described (Goren et. al. (2010))

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
36395994
Reads aligned (%)
92.4
Duplicates removed (%)
18.3
Number of peaks
824 (qval < 1E-05)

mm9

Number of total reads
36395994
Reads aligned (%)
92.1
Duplicates removed (%)
18.2
Number of peaks
939 (qval < 1E-05)

Base call quality data from DBCLS SRA