Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BCL6

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colorectal adenocarcinoma cell line
cell line
DLD-1
passage
10-14
disease state
Dukes' type C, colorectal adenocarcinoma
antibody
rabbit polyclonal anti-BCL6 (N-3) (sc-858 X)
treatment
transfected with pEGFP-C1199Tiam1 and treated with vehicle (RAC1/PAK1 activation)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
9426983
Reads aligned (%)
93.4
Duplicates removed (%)
2.9
Number of peaks
407 (qval < 1E-05)

hg38

Number of total reads
9426983
Reads aligned (%)
94.4
Duplicates removed (%)
2.4
Number of peaks
253 (qval < 1E-05)

Base call quality data from DBCLS SRA