SRX2737720
GSM2579123: Input Chipseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
Castration-resistant prostate cancer
cell type
C4-2
tissue
Prostate
chip antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using the ChIP Assay kit with the procedure provided by the manufacturer. ChIP DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19902252
Reads aligned (%)
89.8
Duplicates removed (%)
3.3
Number of peaks
994 (qval < 1E-05)

hg19

Number of total reads
19902252
Reads aligned (%)
88.7
Duplicates removed (%)
4.7
Number of peaks
1081 (qval < 1E-05)

Base call quality data from DBCLS SRA