Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
Castration-resistant prostate cancer
cell type
C4-2
tissue
Prostate
chip antibody
BMI1 antibody

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using the ChIP Assay kit with the procedure provided by the manufacturer. ChIP DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
28047682
Reads aligned (%)
63.9
Duplicates removed (%)
22.3
Number of peaks
2482 (qval < 1E-05)

hg38

Number of total reads
28047682
Reads aligned (%)
65.1
Duplicates removed (%)
21.7
Number of peaks
2587 (qval < 1E-05)

Base call quality data from DBCLS SRA