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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX2734367
GSM2576146: ChIPseq antiRNAPol2 moonshiner KO; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
Adult ovaries
genotype
w, moon_FS1{delta}1/moon_FS2{delta}28; ;
developmental stage
Adult
tissue
ovary
chip antibody
anti-RNA Pol II (8WG16, Abcam, ab817)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysis and sonication of formaldehyde-crosslinked ovaries NEBNext® Ultra™ DNA Library Prep Kit for Illumina® Ovaries were hand-dissected into ice-cold PBS
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
31600235
Reads aligned (%)
89.7
Duplicates removed (%)
32.9
Number of peaks
7152 (qval < 1E-05)
dm3
Number of total reads
31600235
Reads aligned (%)
89.7
Duplicates removed (%)
32.2
Number of peaks
7331 (qval < 1E-05)
Base call quality data from
DBCLS SRA