SRX2734364
GSM2576143: ChIPseq antiRhino Pld promoter deletion; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
rhi

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
Adult ovaries
genotype
w ; Pld{delta}prom[m1-1] ;
developmental stage
Adult
tissue
ovary
chip antibody
anti-Rhino rabbit polyclonal antibody (PMID: 24906153)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysis and sonication of formaldehyde-crosslinked ovaries NEBNext® Ultra™ DNA Library Prep Kit for Illumina® Ovaries were hand-dissected into ice-cold PBS

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
32178612
Reads aligned (%)
41.4
Duplicates removed (%)
28.1
Number of peaks
6434 (qval < 1E-05)

dm6

Number of total reads
32178612
Reads aligned (%)
38.9
Duplicates removed (%)
32.0
Number of peaks
4195 (qval < 1E-05)

Base call quality data from DBCLS SRA