Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: rhi
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX2734364
GSM2576143: ChIPseq antiRhino Pld promoter deletion; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
rhi
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
Adult ovaries
genotype
w ; Pld{delta}prom[m1-1] ;
developmental stage
Adult
tissue
ovary
chip antibody
anti-Rhino rabbit polyclonal antibody (PMID: 24906153)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysis and sonication of formaldehyde-crosslinked ovaries NEBNext® Ultra™ DNA Library Prep Kit for Illumina® Ovaries were hand-dissected into ice-cold PBS
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
32178612
Reads aligned (%)
41.4
Duplicates removed (%)
28.1
Number of peaks
6434 (qval < 1E-05)
dm6
Number of total reads
32178612
Reads aligned (%)
38.9
Duplicates removed (%)
32.0
Number of peaks
4195 (qval < 1E-05)
Base call quality data from
DBCLS SRA