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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: POU5F1
wikigenes
PDBj
CellType: MRC-5
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2732209
GSM2573034: OSvK rep1 Oct4; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
POU5F1
Cell type
Cell type Class
Lung
Cell type
MRC-5
Tissue
Lung
Cell Type
Fetal
Disease
Normal
Attributes by original data submitter
Sample
source_name
MRC5 Day 5 after OSvK rep1
chip antibody
Oct4 (Abcam ab19857 Lot: GR187600-1)
cell line
MRC5 fibroblast
protocol
Oct4, Sox2-VP16 and Klf4 addition
time
5 days
passage
8
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
10272534
Reads aligned (%)
157.0
Duplicates removed (%)
7.1
Number of peaks
207 (qval < 1E-05)
hg38
Number of total reads
10272534
Reads aligned (%)
159.4
Duplicates removed (%)
7.0
Number of peaks
213 (qval < 1E-05)
Base call quality data from
DBCLS SRA