Antigen

Antigen Class

TFs and others

Antigen

Epitope tags

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MDA-MB-231 clonal cell line expressing dCas9-BFP-KRAB construct

cell line

MDA-MB-231

genotype

PVT1 Knockdown

antibody

Cell Signaling, #2367S

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

described in doi:10.1016/j.cell.2011.09.057 (2011) NEB UltraII NEBnext ultra-II kit (NEB, #E7645)

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

2018711

Reads aligned (%)

98.3

Duplicates removed (%)

11.3

Number of peaks

51 (qval < 1E-05)

hg19

Number of total reads

2018711

Reads aligned (%)

97.5

Duplicates removed (%)

11.5

Number of peaks

51 (qval < 1E-05)