SRX2713390
SA40 ChIPseq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

biomaterial_provider
Not applicable
sample_name
SA40
isolate
Not applicable
age
Not applicable
cell_type
AML
sex
Not applicable
sample_title
SU605
tissue
Blood

Sequenced DNA Library

library_name
Prim98
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31558228
Reads aligned (%)
96.5
Duplicates removed (%)
2.9
Number of peaks
834 (qval < 1E-05)

hg19

Number of total reads
31558228
Reads aligned (%)
95.4
Duplicates removed (%)
3.7
Number of peaks
890 (qval < 1E-05)

Base call quality data from DBCLS SRA