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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: CD14+ cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2713354
SY102 CD14+ ChIPseq Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
CD14+ cells
NA
NA
Attributes by original data submitter
Sample
biomaterial_provider
Not applicable
sample_name
SY102_CD14+
isolate
Not applicable
age
Not applicable
cell_type
CD14+
sex
Not applicable
tissue
Blood
Sequenced DNA Library
library_name
Prim134
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32654065
Reads aligned (%)
96.5
Duplicates removed (%)
2.5
Number of peaks
1171 (qval < 1E-05)
hg19
Number of total reads
32654065
Reads aligned (%)
95.5
Duplicates removed (%)
3.8
Number of peaks
1211 (qval < 1E-05)
Base call quality data from
DBCLS SRA