Antigen

Antigen Class

TFs and others

Antigen

YY1

Cell type

Cell type Class

Liver

Cell type

HuH-7

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

YY1_Huh7

cell line

Huh7

cell type

liver cancer cell line

chip antibody

YY1

chip antibody vendor

santa cruz

lot

B1115

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed in 0.3% formaldehyde for 30 minutes at 4 degrees prior to processing for ChIP using protocol from Raab et al 2015. Kapa Hyperprep kit using Illumina Truseq barcoded adapters

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

15960918

Reads aligned (%)

96.5

Duplicates removed (%)

3.6

Number of peaks

6464 (qval < 1E-05)

hg19

Number of total reads

15960918

Reads aligned (%)

96.1

Duplicates removed (%)

3.5

Number of peaks

6518 (qval < 1E-05)