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For hg19
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For hg38
BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: YY1
wikigenes
PDBj
CellType: HuH-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2708828
GSM2564089: YY1 Huh7 A; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
YY1
Cell type
Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
source_name
YY1_Huh7
cell line
Huh7
cell type
liver cancer cell line
chip antibody
YY1
chip antibody vendor
santa cruz
lot
B1115
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 0.3% formaldehyde for 30 minutes at 4 degrees prior to processing for ChIP using protocol from Raab et al 2015. Kapa Hyperprep kit using Illumina Truseq barcoded adapters
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
17568051
Reads aligned (%)
97.2
Duplicates removed (%)
2.7
Number of peaks
957 (qval < 1E-05)
hg38
Number of total reads
17568051
Reads aligned (%)
97.3
Duplicates removed (%)
2.7
Number of peaks
912 (qval < 1E-05)
Base call quality data from
DBCLS SRA