SRX2708816
GSM2564077: Input Huh7 A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
Input_Huh7
cell line
Huh7
cell type
liver cancer cell line
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 0.3% formaldehyde for 30 minutes at 4 degrees prior to processing for ChIP using protocol from Raab et al 2015. Kapa Hyperprep kit using Illumina Truseq barcoded adapters

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36405973
Reads aligned (%)
99.1
Duplicates removed (%)
0.5
Number of peaks
295 (qval < 1E-05)

hg19

Number of total reads
36405973
Reads aligned (%)
98.4
Duplicates removed (%)
0.6
Number of peaks
400 (qval < 1E-05)

Base call quality data from DBCLS SRA