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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: MV-4-11
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2705418
MV-4-11 Treated 1 RARA WCE
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
isolate
Not applicable
age
Not applicable
biomaterial_provider
Not applicable
sex
Not applicable
tissue
Not applicable
cell_line
MV-4-11
cell_type
AML
treatment
SY-1425
Sequenced DNA Library
library_name
CL80
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29867302
Reads aligned (%)
91.6
Duplicates removed (%)
2.3
Number of peaks
923 (qval < 1E-05)
hg19
Number of total reads
29867302
Reads aligned (%)
90.8
Duplicates removed (%)
3.5
Number of peaks
1112 (qval < 1E-05)
Base call quality data from
DBCLS SRA