SRX2705412
NB-4 RARA IP WCE

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

isolate
Not applicable
age
Not applicable
biomaterial_provider
Not applicable
sex
Not applicable
tissue
Not applicable
cell_line
NB-4
cell_type
AML
treatment
DMSO

Sequenced DNA Library

library_name
CL86
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40656334
Reads aligned (%)
97.6
Duplicates removed (%)
3.2
Number of peaks
982 (qval < 1E-05)

hg19

Number of total reads
40656334
Reads aligned (%)
96.6
Duplicates removed (%)
4.4
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA