Antigen

Antigen Class

TFs and others

Antigen

NR2C2

Cell type

Cell type Class

Lung

Cell type

WI-38

Primary Tissue

Lung

Tissue Diagnosis

Normal

Sample

source_name

WI-38 VA13 ALT (+) cells, NR2C2 ChIP

cell line

WI-38

alt status

+

chip antibody

anti-NR2C2 / Mouse monoclonal IgG (PPMX PP-H0107B-00)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by Fasteris SA (Switzerland) and were sequenced on HiSeq 2000.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

24877211

Reads aligned (%)

85.5

Duplicates removed (%)

7.5

Number of peaks

2169 (qval < 1E-05)

hg38

Number of total reads

24877211

Reads aligned (%)

87.7

Duplicates removed (%)

5.9

Number of peaks

2264 (qval < 1E-05)