Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa 1.2.11 ALT (-) cells, HeLa input DNA
cell line
HeLa
alt status
-
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by Fasteris SA (Switzerland) and were sequenced on HiSeq 2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
145170110
Reads aligned (%)
99.1
Duplicates removed (%)
12.0
Number of peaks
172791 (qval < 1E-05)

hg19

Number of total reads
145170110
Reads aligned (%)
98.6
Duplicates removed (%)
12.9
Number of peaks
172993 (qval < 1E-05)

Base call quality data from DBCLS SRA