Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Lung

Cell type

WI-38

Primary Tissue

Lung

Tissue Diagnosis

Normal

Sample

source_name

WI-38 VA13 ALT (+) cells, VA13 input DNA

cell line

WI-38

alt status

+

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by Fasteris SA (Switzerland) and were sequenced on HiSeq 2000.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

160774173

Reads aligned (%)

99.2

Duplicates removed (%)

14.0

Number of peaks

4204 (qval < 1E-05)

hg19

Number of total reads

160774173

Reads aligned (%)

98.5

Duplicates removed (%)

15.6

Number of peaks

3314 (qval < 1E-05)