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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: JUN
wikigenes
PDBj
CellType: BT-549
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX268299
GSM1125262: cJun ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
JUN
Cell type
Cell type Class
Breast
Cell type
BT-549
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal
Attributes by original data submitter
Sample
source_name
BT549 breast cancer cells, cJun ChIP
cell line
BT549
cell type
triple negative breast cancer cells
chip antibody
c-Jun (H-79, Santa Cruz)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46734670
Reads aligned (%)
98.6
Duplicates removed (%)
40.2
Number of peaks
16636 (qval < 1E-05)
hg19
Number of total reads
46734670
Reads aligned (%)
97.9
Duplicates removed (%)
41.8
Number of peaks
16625 (qval < 1E-05)
Base call quality data from
DBCLS SRA