SRX2672470
GSM2550029: ChIP-seq from SUDHL6 (ENCLB149NCP); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
SU-DHL-6
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

age
43 year
dev stage
adult
donor ID
ENCDO353AAA
sex
male
health state
large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
sample type
immortalized cell line
cell line
SUDHL6
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
45548539
Reads aligned (%)
96.9
Duplicates removed (%)
23.6
Number of peaks
972 (qval < 1E-05)

hg38

Number of total reads
45548539
Reads aligned (%)
97.8
Duplicates removed (%)
21.6
Number of peaks
821 (qval < 1E-05)

Base call quality data from DBCLS SRA