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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: SU-DHL-6
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2672470
GSM2550029: ChIP-seq from SUDHL6 (ENCLB149NCP); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Blood
Cell type
SU-DHL-6
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma
Attributes by original data submitter
Sample
age
43 year
dev stage
adult
donor ID
ENCDO353AAA
sex
male
health state
large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
sample type
immortalized cell line
cell line
SUDHL6
lab
Bradley Bernstein, Broad
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
45548539
Reads aligned (%)
97.8
Duplicates removed (%)
21.6
Number of peaks
821 (qval < 1E-05)
hg19
Number of total reads
45548539
Reads aligned (%)
96.9
Duplicates removed (%)
23.6
Number of peaks
972 (qval < 1E-05)
Base call quality data from
DBCLS SRA