SRX2672469
GSM2550028: ChIP-seq from OCI-LY1 (ENCLB429FEJ); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
OCI-LY1
NA
NA

Attributes by original data submitter

Sample

age
44 year
dev stage
adult
donor ID
ENCDO350AAA
sex
male
health state
B cell lymphoma
sample type
immortalized cell line
cell line
OCI-LY1
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34281291
Reads aligned (%)
97.4
Duplicates removed (%)
10.1
Number of peaks
1366 (qval < 1E-05)

hg19

Number of total reads
34281291
Reads aligned (%)
95.9
Duplicates removed (%)
12.3
Number of peaks
1232 (qval < 1E-05)

Base call quality data from DBCLS SRA