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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMARCC1
wikigenes
PDBj
CellType: HMLE
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2662142
GSM2546250: HMLE-TwER 0nM SMARCC1 ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCC1
Cell type
Cell type Class
Breast
Cell type
HMLE
NA
NA
Attributes by original data submitter
Sample
source_name
HMLE-Twist-ER Ctrl
chip antibody
SMARCC1 (Santa Cruz, sc-9746)
cell type
HMLE-Twist-ER_0nM
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were sonicated to retrieve lysates and protein-DNA complexes were isolated with antibody. To make libraries, TruSeq ChIP protocol was followed.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
23410583
Reads aligned (%)
54.8
Duplicates removed (%)
32.1
Number of peaks
633 (qval < 1E-05)
hg38
Number of total reads
23410583
Reads aligned (%)
56.2
Duplicates removed (%)
31.1
Number of peaks
477 (qval < 1E-05)
Base call quality data from
DBCLS SRA