Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

GEO Accession
GSM1122536
genetic background
C57BL/6
gender
male
tissue
liver
treatment
veh
replicate
rep1
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
24973141
Reads aligned (%)
97.3
Duplicates removed (%)
39.6
Number of peaks
54627 (qval < 1E-05)

mm9

Number of total reads
24973141
Reads aligned (%)
97.1
Duplicates removed (%)
39.7
Number of peaks
54587 (qval < 1E-05)

Base call quality data from DBCLS SRA