Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYH11

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
U937CM cell line (leukemic)
cell type
leukemic cell line
cell line
U937CM
antibody target
MYH11
antibody company
Diagenode
antibody catalogue number
A1379
treatment
3 days Tet free medium

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
101492995
Reads aligned (%)
98.8
Duplicates removed (%)
23.0
Number of peaks
31646 (qval < 1E-05)

hg19

Number of total reads
101492995
Reads aligned (%)
98.5
Duplicates removed (%)
23.4
Number of peaks
31759 (qval < 1E-05)

Base call quality data from DBCLS SRA