Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBFB

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
U937CM cell line (leukemic)
cell type
leukemic cell line
cell line
U937CM
antibody target
CBFB
antibody company
Diagenode
antibody catalogue number
A1329
treatment
Tet (1 mM) containing medium

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
15547193
Reads aligned (%)
72.1
Duplicates removed (%)
22.5
Number of peaks
12549 (qval < 1E-05)

hg38

Number of total reads
15547193
Reads aligned (%)
72.8
Duplicates removed (%)
22.2
Number of peaks
12441 (qval < 1E-05)

Base call quality data from DBCLS SRA