Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBFB

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Patient AML cells
cell type
Patient AML cells
cell line
--
antibody target
CBFB
antibody company
Diagenode
antibody catalogue number
A1329
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
33684843
Reads aligned (%)
3.2
Duplicates removed (%)
93.1
Number of peaks
2218 (qval < 1E-05)

hg38

Number of total reads
33684843
Reads aligned (%)
3.4
Duplicates removed (%)
92.6
Number of peaks
2240 (qval < 1E-05)

Base call quality data from DBCLS SRA