Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYH11

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Patient AML cells
cell type
Patient AML cells
cell line
--
antibody target
MYH11
antibody company
Novus
antibody catalogue number
21370002
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
34589400
Reads aligned (%)
59.2
Duplicates removed (%)
87.7
Number of peaks
3095 (qval < 1E-05)

hg19

Number of total reads
34589400
Reads aligned (%)
58.8
Duplicates removed (%)
88.4
Number of peaks
3082 (qval < 1E-05)

Base call quality data from DBCLS SRA