Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
ME-1
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
ME-1 cell line (leukemic)
cell type
leukemic cell line
cell line
ME-1
antibody target
PU.1
antibody company
Santa Cruz
antibody catalogue number
sc-22805
treatment
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
25193225
Reads aligned (%)
92.8
Duplicates removed (%)
81.5
Number of peaks
6168 (qval < 1E-05)

hg19

Number of total reads
25193225
Reads aligned (%)
92.4
Duplicates removed (%)
81.9
Number of peaks
6193 (qval < 1E-05)

Base call quality data from DBCLS SRA