Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
ME-1
Primary Tissue
Bone Marrow
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
ME-1 cell line (leukemic)
cell type
leukemic cell line
cell line
ME-1
antibody target
RUNX1
antibody company
Abcam
antibody catalogue number
ab23980
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). Libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
22968255
Reads aligned (%)
31.6
Duplicates removed (%)
65.0
Number of peaks
21316 (qval < 1E-05)

hg38

Number of total reads
22968255
Reads aligned (%)
32.1
Duplicates removed (%)
64.5
Number of peaks
21433 (qval < 1E-05)

Base call quality data from DBCLS SRA