Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbx21

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
strain
C57BL/6
genotype
WT
culture condition
ChIP-seq in vitro culture protocol (IFN-γ)
chip antibody
anti-T-bet, sc-21003, Santa Cruz Biotechnology

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
41774831
Reads aligned (%)
95.4
Duplicates removed (%)
74.2
Number of peaks
2808 (qval < 1E-05)

mm9

Number of total reads
41774831
Reads aligned (%)
95.2
Duplicates removed (%)
74.3
Number of peaks
2792 (qval < 1E-05)

Base call quality data from DBCLS SRA