Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, siCtl, FOXA1 ChIP
cell line
VCaP
cell type
prostate cancer cell line
sirna
siCtl
passage
< 25
chip antibody
FOXA1 (EMD Millipore cat. 17-10267)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
31187262
Reads aligned (%)
91.1
Duplicates removed (%)
6.6
Number of peaks
83840 (qval < 1E-05)

hg38

Number of total reads
31187262
Reads aligned (%)
92.1
Duplicates removed (%)
6.0
Number of peaks
84018 (qval < 1E-05)

Base call quality data from DBCLS SRA