SRX264235
GSM1120740: ChIP Bach2 WT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Bach2

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary CD4+ T cells from spleen and lymph nodes
strain
C57BL/6J
genotype/variation
wild type
cell type
in vitro polarized inducible regulatory cells for 3 days
passages
FACS sorted naive CD4+T cells cultured in vitro for 3 days under iTreg condition
chip antibody
anti-Bach2 - rabbit antibody (generated in-house, Tohoku University)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39935580
Reads aligned (%)
94.6
Duplicates removed (%)
66.9
Number of peaks
12753 (qval < 1E-05)

mm9

Number of total reads
39935580
Reads aligned (%)
94.4
Duplicates removed (%)
67.0
Number of peaks
12789 (qval < 1E-05)

Base call quality data from DBCLS SRA