Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
murine embryonic stem cells
strain
129/Ola
passage
13-16
cell line
E14
genotype/variation
WT
treatment
untreated
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIPseq, cells were crosslinked with 1% formaldehyde. Crosslinking was quenched with 125mM glycine, and the cell pellets were sonicated for ChIP. ChIP samples were end-repaired, A-tailed, and barcoded adaptors were ligated. DNA purified using EconoSpin column on every steps. The adaptor ligated DNA was PCR amplified for 16 cycles with Phusion polymerase.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
2381814
Reads aligned (%)
71.2
Duplicates removed (%)
15.0
Number of peaks
45 (qval < 1E-05)

mm9

Number of total reads
2381814
Reads aligned (%)
71.2
Duplicates removed (%)
15.2
Number of peaks
37 (qval < 1E-05)

Base call quality data from DBCLS SRA