Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Cardiovascular
Cell type
Myocytes, Cardiac
MeSH Description
Striated muscle cells found in the heart. They are derived from cardiac myoblasts (MYOBLASTS, CARDIAC).

Attributes by original data submitter

Sample

age
unknown
dev stage
fetal
donor ID
ENCDO924HBJ
cell type
cardiac muscle cell
sex
not collected
sample type
in vitro differentiated cells
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
46617665
Reads aligned (%)
90.6
Duplicates removed (%)
10.4
Number of peaks
1002 (qval < 1E-05)

hg19

Number of total reads
46617665
Reads aligned (%)
89.4
Duplicates removed (%)
11.4
Number of peaks
971 (qval < 1E-05)

Base call quality data from DBCLS SRA