SRX2636426
GSM2534581: ChIP-seq from KOPT-K1 (ENCLB856ENV); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
KOPT-K1
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell line
KOPT-K1
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO568LPD
age
unknown
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43719348
Reads aligned (%)
61.4
Duplicates removed (%)
3.8
Number of peaks
1484 (qval < 1E-05)

hg19

Number of total reads
43719348
Reads aligned (%)
61.2
Duplicates removed (%)
4.0
Number of peaks
1502 (qval < 1E-05)

Base call quality data from DBCLS SRA