Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Blood
Cell type
KMS-11
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
KMS-11
sex
female
sample type
immortalized cell line
donor ID
ENCDO133EXU
age
67 year
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
19323363
Reads aligned (%)
97.2
Duplicates removed (%)
13.6
Number of peaks
659 (qval < 1E-05)

hg19

Number of total reads
19323363
Reads aligned (%)
96.2
Duplicates removed (%)
15.0
Number of peaks
557 (qval < 1E-05)

Base call quality data from DBCLS SRA