Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

age

unknown

dev stage

adult

donor ID

ENCDO000AAK

sex

female

health state

unknown

sample type

immortalized cell line

cell line

GM12878

passage number

16

lab

Richard Myers, HAIB

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

26022526

Reads aligned (%)

98.0

Duplicates removed (%)

2.7

Number of peaks

712 (qval < 1E-05)

hg19

Number of total reads

26022526

Reads aligned (%)

96.5

Duplicates removed (%)

3.3

Number of peaks

961 (qval < 1E-05)