Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
DOHH-2
Primary Tissue
Blood
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

age
60 year
dev stage
adult
donor ID
ENCDO352AAA
sex
male
health state
refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma
sample type
immortalized cell line
cell line
DOHH2
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
80887957
Reads aligned (%)
95.8
Duplicates removed (%)
12.4
Number of peaks
16220 (qval < 1E-05)

hg19

Number of total reads
80887957
Reads aligned (%)
95.5
Duplicates removed (%)
12.9
Number of peaks
16305 (qval < 1E-05)

Base call quality data from DBCLS SRA