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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: KOPT-K1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2636270
GSM2534362: ChIP-seq from KOPT-K1 (ENCLB958OJS); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
KOPT-K1
NA
NA
Attributes by original data submitter
Sample
dev stage
unknown
cell line
KOPT-K1
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO568LPD
age
unknown
lab
Bradley Bernstein, Broad
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47271822
Reads aligned (%)
85.4
Duplicates removed (%)
57.5
Number of peaks
28296 (qval < 1E-05)
hg19
Number of total reads
47271822
Reads aligned (%)
85.0
Duplicates removed (%)
57.8
Number of peaks
28201 (qval < 1E-05)
Base call quality data from
DBCLS SRA