Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
KMS-11
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
KMS-11
sex
female
sample type
immortalized cell line
donor ID
ENCDO133EXU
age
67 year
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
79334612
Reads aligned (%)
62.1
Duplicates removed (%)
5.1
Number of peaks
1418 (qval < 1E-05)

hg19

Number of total reads
79334612
Reads aligned (%)
61.6
Duplicates removed (%)
6.7
Number of peaks
1019 (qval < 1E-05)

Base call quality data from DBCLS SRA