Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2F6

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

age
53 year
dev stage
adult
donor ID
ENCDO000AAD
sex
female
health state
chronic myelogenous leukemia (CML)
sample type
immortalized cell line
cell line
K562
passage number
6
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
45018004
Reads aligned (%)
95.0
Duplicates removed (%)
9.8
Number of peaks
25349 (qval < 1E-05)

hg19

Number of total reads
45018004
Reads aligned (%)
94.4
Duplicates removed (%)
10.7
Number of peaks
25207 (qval < 1E-05)

Base call quality data from DBCLS SRA