Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
cell line
K562
sex
female
sample type
immortalized cell line
donor ID
ENCDO000AAD
age
53 year
health state
chronic myelogenous leukemia (CML)
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
35494854
Reads aligned (%)
98.6
Duplicates removed (%)
9.9
Number of peaks
21923 (qval < 1E-05)

hg19

Number of total reads
35494854
Reads aligned (%)
98.0
Duplicates removed (%)
11.1
Number of peaks
21562 (qval < 1E-05)

Base call quality data from DBCLS SRA