Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
Loucy
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

dev stage
adult
cell line
Loucy
sex
female
sample type
immortalized cell line
donor ID
ENCDO732PDS
age
38 year
health state
T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629
lab
Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/61c0d277-54c3-4e17-afcd-4059b22d89f6/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v09.1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
77378275
Reads aligned (%)
90.7
Duplicates removed (%)
57.2
Number of peaks
29453 (qval < 1E-05)

hg19

Number of total reads
77378275
Reads aligned (%)
90.4
Duplicates removed (%)
57.9
Number of peaks
29422 (qval < 1E-05)

Base call quality data from DBCLS SRA