Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Uterus

Cell type

Vagina

MeSH Description

The genital canal in the female, extending from the UTERUS to the VULVA. (Stedman, 25th ed)

Sample

dev stage

adult

sex

female

sample type

tissue

donor ID

ENCDO793LXB

age

53 year

lab

Bradley Bernstein, Broad

tissue

vagina

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf general protocol: https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

60156800

Reads aligned (%)

98.1

Duplicates removed (%)

4.4

Number of peaks

1614 (qval < 1E-05)

hg19

Number of total reads

60156800

Reads aligned (%)

97.0

Duplicates removed (%)

5.6

Number of peaks

1217 (qval < 1E-05)