Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Cardiovascular

Cell type

HUVEC

Primary Tissue

Umbilical Cord

Tissue Diagnosis

Normal

Sample

dev stage

unknown

cell type

endothelial cell of umbilical vein

sex

male

sample type

primary cell

donor ID

ENCDO551FXN

age

0 year

passage number

2

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

34659466

Reads aligned (%)

96.0

Duplicates removed (%)

3.9

Number of peaks

21539 (qval < 1E-05)

hg19

Number of total reads

34659466

Reads aligned (%)

94.9

Duplicates removed (%)

5.6

Number of peaks

21586 (qval < 1E-05)